General Reference

A field guide to the conditions functional medicine looks at.

These are the twenty categories our assessment screens for. Each is a common pattern practitioners investigate when standard workups come back "normal" but you still don't feel right. Nothing on this page is medical advice — it's a starting vocabulary for a conversation with a qualified practitioner.

Medical disclaimer

This page is educational only. It is NOT medical advice, diagnosis, or treatment. Do not self-treat based on the information here. If you have symptoms, consult a licensed healthcare professional. If your symptoms are severe or worsening — chest pain, difficulty breathing, suicidal thoughts, severe bleeding — call your local emergency number.

Gut Dysbiosis & Intestinal Permeability

An imbalance in the gut microbiome combined with weakened intestinal-barrier integrity. Considered a foundational driver of many chronic patterns in functional medicine.

Common symptoms
  • Bloating, gas, irregular bowel habits
  • Food sensitivities that seem to grow over time
  • Skin flares (eczema, acne, rosacea)
  • Brain fog after eating
Possible root causes
  • Antibiotic exposure, chronic stress, low stomach acid
  • Diet low in fiber and diverse plants
  • Chronic infections (SIBO, H. pylori, parasites)
Labs a practitioner may consider
  • GI-MAP or comprehensive stool analysis
  • SIBO breath test
  • Zonulin, calprotectin

Fibromyalgia & Chronic Pain Syndromes

A central-nervous-system pain amplification pattern often overlapping with fatigue, sleep disturbance, and cognitive complaints. Functional medicine looks upstream at mitochondria, infections, and HPA-axis strain.

Common symptoms
  • Widespread muscle/joint pain and tenderness
  • Unrefreshing sleep
  • Post-exertional fatigue
  • Cognitive difficulty ('fibro fog')
Possible root causes
  • Chronic viral or tick-borne infections
  • Mitochondrial dysfunction
  • Trauma-driven nervous-system dysregulation
Labs a practitioner may consider
  • Comprehensive thyroid panel
  • Cortisol rhythm (4-point saliva)
  • Vitamin D, magnesium, B12, ferritin

Lyme Disease & Tick-Borne Co-Infections

Borrelia burgdorferi and common co-infections (Bartonella, Babesia, Ehrlichia, Anaplasma) can produce multi-system, migrating symptoms that persist long after the initial exposure.

Common symptoms
  • Migrating joint pain
  • Night sweats, air-hunger, foot pain
  • Neurological symptoms (tingling, twitching, cognitive changes)
  • Symptom flares in cycles
Possible root causes
  • Prior tick or insect exposure (may be unrecalled)
  • Immune dysregulation allowing persistence
Labs a practitioner may consider
  • Western blot (IgG/IgM)
  • IGeneX or T-cell/ELISpot testing
  • Babesia FISH, Bartonella FISH/PCR

CIRS / Mold Biotoxin Illness

Chronic Inflammatory Response Syndrome describes a persistent innate-immune activation triggered by biotoxins — most often water-damaged buildings and mold exposure.

Common symptoms
  • Symptoms worse in certain buildings
  • Static shocks, ice-pick pains, unusual thirst/urination
  • Vision changes, difficulty finding words
  • Post-exertional fatigue
Possible root causes
  • Exposure to a water-damaged building
  • Genetic HLA susceptibility (~24% of population)
Labs a practitioner may consider
  • VCS (visual contrast sensitivity)
  • Urine mycotoxins
  • C4a, TGF-β1, MMP-9, MSH panel
  • HLA-DR typing

Mitochondrial Dysfunction

The mitochondria are the cell's energy factories. When they underperform, symptoms are often 'everything, everywhere' — fatigue, exercise intolerance, cognitive slowing.

Common symptoms
  • Fatigue not relieved by rest
  • Post-exertional crash
  • Poor exercise tolerance
  • Muscle weakness or heaviness
Possible root causes
  • Chronic infection, toxin burden (mold, metals)
  • Nutrient deficiencies (CoQ10, B vitamins, magnesium)
  • Long-term inflammatory diet or oxidative stress
Labs a practitioner may consider
  • Organic acids test (OAT)
  • Lactate/pyruvate ratio
  • RBC magnesium, CoQ10, carnitine

HPA-Axis Dysregulation & Low Cortisol ('Adrenal Fatigue')

A disruption in the brain–adrenal signaling that governs cortisol. Early on the pattern is usually 'wired-tired' with elevated cortisol; over months and years of unrelenting stress it commonly progresses to LOW cortisol output — a blunted, flat curve where the body can no longer mount a proper stress response. This late-stage low-cortisol picture is what most people mean by 'adrenal burnout' and it is frequently missed on standard morning-only blood cortisol tests.

Common symptoms
  • Cannot get out of bed without caffeine; mornings feel impossible (low AM cortisol)
  • Salt cravings, low blood pressure, dizziness on standing
  • Hypoglycemia between meals — shaky, foggy, irritable if a meal is missed
  • A 'flat' stress response: numb, detached, or shutdown instead of activated
  • Wired at night, exhausted in the morning (earlier stage: reversed rhythm)
  • Crashes after stress, exercise, or a busy day that take days to recover from
  • Reduced stamina, low libido, poor exercise tolerance
Possible root causes
  • Prolonged psychological or physiological stress, grief, overtraining
  • Chronic blood-sugar dysregulation and under-eating
  • Chronic infections, inflammation, or unresolved trauma driving the HPA axis into downregulation
  • Sleep debt and circadian disruption
Labs a practitioner may consider
  • DUTCH complete or 4-point salivary cortisol (captures the full diurnal curve — essential for detecting low cortisol)
  • DHEA-S and cortisol:DHEA ratio
  • ACTH, morning serum cortisol (screen only — misses low output later in the day)
  • Fasting insulin & glucose

Thyroid Dysfunction

Beyond just TSH, functional medicine examines free T3, free T4, reverse T3, and antibodies — often finding suboptimal conversion or autoimmune activity (Hashimoto's) missed by standard panels.

Common symptoms
  • Cold intolerance, dry skin, hair loss
  • Constipation, weight changes
  • Slow morning temperature
  • Depression or anxiety
Possible root causes
  • Hashimoto's autoimmunity
  • Nutrient shortfalls (selenium, iodine, iron, zinc)
  • Chronic stress-driven low T3
Labs a practitioner may consider
  • TSH, free T3, free T4, reverse T3
  • TPO and thyroglobulin antibodies
  • Ferritin, selenium, zinc

Sex Hormone Imbalance

Estrogen dominance, low progesterone, low testosterone, and peri/post-menopausal shifts often show up as mood, sleep, cycle, and body-composition changes.

Common symptoms
  • PMS, heavy or irregular cycles
  • Hot flashes, night sweats
  • Low libido, mood swings
  • Belly-weight gain
Possible root causes
  • Impaired estrogen detoxification
  • Chronic stress stealing progesterone precursors
  • Insulin resistance
Labs a practitioner may consider
  • DUTCH complete (hormones + metabolites)
  • Serum sex hormones on cycle day 19-22
  • SHBG, free testosterone

Insulin Resistance & Metabolic Syndrome

Cells become less responsive to insulin, driving blood-sugar swings, weight gain, and downstream inflammation. A root driver of many chronic conditions.

Common symptoms
  • Energy crashes 2-3 hours after meals
  • Cravings for carbs / sweets
  • Difficulty losing weight, belly fat
  • Skin tags, dark neck/armpit skin
Possible root causes
  • Refined-carb and seed-oil-heavy diet
  • Sedentary lifestyle
  • Chronic stress and poor sleep
Labs a practitioner may consider
  • Fasting insulin, HOMA-IR
  • HbA1c, fasting glucose
  • Triglycerides / HDL ratio

Autoimmune Activity

The immune system misidentifies self-tissue as foreign. Functional medicine looks at the shared drivers (gut, infections, toxins, stress) rather than treating each autoimmune label in isolation.

Common symptoms
  • Migratory joint pain and stiffness
  • Unexplained fatigue and flares
  • Rashes, hair loss, dry eyes/mouth
  • Family history of autoimmune disease
Possible root causes
  • Leaky gut and food triggers
  • Chronic infections
  • Toxin burden (mold, heavy metals)
Labs a practitioner may consider
  • ANA with reflex
  • TPO, TG, tissue transglutaminase
  • hs-CRP, ESR

Histamine Intolerance / MCAS

Mast Cell Activation Syndrome and histamine intolerance produce multi-system inflammatory symptoms triggered by foods, stress, temperature, or exposures.

Common symptoms
  • Flushing, hives, itching
  • Headaches with red wine, aged cheese, fermented foods
  • GI upset with 'healthy' foods
  • Symptoms shift day-to-day
Possible root causes
  • Gut dysbiosis, mold exposure
  • Genetic DAO/HNMT variants
  • Chronic stress and infection
Labs a practitioner may consider
  • Serum tryptase (fasting)
  • 24-hour urine N-methylhistamine
  • DAO enzyme

Heavy Metal Toxicity

Bioaccumulation of mercury, lead, cadmium, aluminum, and arsenic from environment, dental work, or diet can silently impair mitochondria and neurology.

Common symptoms
  • Neurological symptoms (tremor, memory, mood)
  • Fatigue and muscle weakness
  • Metallic taste
  • Sensitivity to chemicals
Possible root causes
  • Amalgam fillings, seafood consumption
  • Occupational exposure
  • Impaired detox capacity
Labs a practitioner may consider
  • Provoked urine metals panel
  • Blood mercury / lead
  • Hair mineral analysis (with caveats)

Phase I / II Detox Impairment

The liver's two-phase detoxification requires specific nutrients and healthy pathways. When impaired, everyday exposures accumulate and drive symptoms.

Common symptoms
  • Sensitivity to alcohol, caffeine, medications, or fragrances
  • Headaches from smells or chemicals
  • Skin flares after exposures
  • Slow recovery after drinking or eating certain foods
Possible root causes
  • SNPs in MTHFR, COMT, CYP genes
  • Nutrient shortfalls (B vitamins, glutathione precursors)
  • High toxin load
Labs a practitioner may consider
  • Organic acids test (methylation markers)
  • Homocysteine, RBC folate, B12/MMA
  • Glutathione

Neuroinflammation & Brain Fog

Persistent activation of brain immune cells (microglia) driven by gut, systemic inflammation, infections, or toxins — producing cognitive, mood, and sensory symptoms.

Common symptoms
  • Brain fog, word-finding difficulty
  • Anxiety or depression that feels 'inflammatory'
  • Sensory sensitivity (light, sound)
  • Cognitive symptoms flare with poor sleep or infection
Possible root causes
  • Gut permeability and dysbiosis
  • Chronic infections, mold
  • Blood sugar swings, poor sleep
Labs a practitioner may consider
  • hs-CRP, IL-6
  • Homocysteine
  • Omega-3 index

Macronutrient Imbalance

Shortfalls in protein, healthy fats, or fiber — or chronic under-eating — undermine every other system and are frequently overlooked when chasing exotic diagnoses.

Common symptoms
  • Poor recovery after exercise
  • Hair loss, brittle nails
  • Constant hunger or extreme fullness
  • Constipation from low fiber
Possible root causes
  • Under-eating on restrictive diets
  • Low protein intake (especially in women 40+)
  • Ultra-processed food dominance
Labs a practitioner may consider
  • Serum albumin, total protein, prealbumin
  • Omega-3 index
  • Fasting lipid panel

Micronutrient Deficiencies

Sub-clinical shortfalls in specific vitamins and minerals (vitamin D, B12, iron, magnesium, zinc, iodine) drive fatigue, mood, and cognitive symptoms — and are among the most fixable root causes.

Common symptoms
  • Fatigue disproportionate to lifestyle
  • Restless legs, muscle cramps (magnesium)
  • Cracks at mouth corners (B2/iron)
  • Frequent infections, slow wound healing (zinc, D)
Possible root causes
  • Malabsorption (gut dysbiosis, low stomach acid)
  • Restrictive diets, ultra-processed food
  • Medications (PPIs, metformin, oral contraceptives)
Labs a practitioner may consider
  • 25-OH vitamin D, B12 / MMA, folate
  • Ferritin and full iron studies
  • RBC magnesium, zinc, selenium, iodine

POTS / Dysautonomia

Postural Orthostatic Tachycardia Syndrome and related autonomic dysregulation disorders where the autonomic nervous system struggles to regulate heart rate, blood pressure, temperature, and blood flow — especially with posture changes. Often overlaps with post-viral syndromes, hypermobility (hEDS), MCAS, and mitochondrial dysfunction.

Common symptoms
  • Heart racing or pounding on standing (>30 bpm rise within 10 min)
  • Lightheadedness, near-fainting, fatigue on upright activity
  • Brain fog, exercise intolerance, heat intolerance
  • Blood pooling / mottling in legs, cold extremities
  • Nausea, early satiety, bladder urgency
Possible root causes
  • Post-viral (COVID, EBV, enterovirus), post-concussion, post-surgical onset
  • Hypovolemia, deconditioning, low sodium/aldosterone
  • Overlap with MCAS, connective-tissue laxity (hEDS), Lyme, mold, autoimmunity
Labs a practitioner may consider
  • 10-minute NASA lean test or tilt-table test
  • Plasma/urine catecholamines, aldosterone, renin
  • Ferritin, B12, comprehensive thyroid, morning cortisol
  • Autoimmune / small-fiber neuropathy workup where indicated

Long COVID & Post-Viral Syndrome

Persistent multi-system symptoms — fatigue, brain fog, exercise intolerance, autonomic dysfunction, breathlessness — that continue for months after an acute viral infection (COVID-19, EBV, enterovirus, influenza). Functional medicine looks at mitochondrial injury, viral persistence, immune dysregulation, mast cell activation, and autonomic (POTS-like) overlap.

Common symptoms
  • Fatigue and post-exertional malaise (crashes after mild activity)
  • Brain fog, poor recall, word-finding trouble
  • Air hunger, exercise intolerance, heart racing on standing
  • New food/scent sensitivities, loss or distortion of smell/taste
  • Sleep disruption, temperature dysregulation
Possible root causes
  • Viral persistence (spike protein, EBV reactivation)
  • Mitochondrial injury and impaired energy production
  • Immune dysregulation, autoantibody formation, MCAS-like activation
  • Autonomic nervous system injury (POTS-overlap)
  • Microclotting and endothelial dysfunction
Labs a practitioner may consider
  • 10-minute NASA lean test or tilt-table test
  • EBV panel, comprehensive viral reactivation panel
  • hs-CRP, D-dimer, fibrinogen, ferritin
  • Comprehensive thyroid, morning cortisol, B12, vitamin D
  • Small-fiber neuropathy / autoimmune workup where indicated

Anxiety, Emotional Dysregulation & Trauma

Chronic anxiety, unresolved trauma, and nervous-system dysregulation are not 'just in your head' — they physically re-shape immunity, gut function, hormones, and pain perception. Functional medicine treats the mind-body loop as a foundational root cause, not an afterthought.

Common symptoms
  • Persistent anxiety, panic, or feeling 'on edge'
  • Emotional numbing, dissociation, or shutdown under stress
  • Chronic body tension (jaw, shoulders, chest, gut)
  • Intrusive thoughts, nightmares, hypervigilance
  • Difficulty with close relationships or trust
  • Symptoms that flare with emotional stress
Possible root causes
  • Adverse childhood experiences (ACEs) or adult trauma
  • Chronic stress and unresolved grief
  • Nervous-system 'stuck' in sympathetic (fight/flight) or dorsal-vagal (shutdown) states
  • Gut-brain axis disruption feeding back into mood
Labs a practitioner may consider
  • ACE (adverse childhood experiences) questionnaire
  • DUTCH cortisol rhythm (chronic stress footprint)
  • HRV (heart rate variability) tracking for autonomic tone
  • Screening for PTSD, C-PTSD, GAD, and depression with a qualified clinician

Irritable Bowel Syndrome (IBS)

A disorder of gut-brain communication where the intestine is structurally normal but functionally hypersensitive — driving pain, altered bowel habits, and unpredictable flares. Functional medicine looks upstream at SIBO, dysbiosis, food triggers, nervous-system tone, and unresolved stress.

Common symptoms
  • Abdominal pain or cramping relieved (or worsened) by bowel movements
  • Alternating constipation and diarrhea (IBS-M) or one dominant pattern (IBS-C, IBS-D)
  • Bloating and visible distension worsening through the day
  • Urgency, mucus in stool, or incomplete evacuation
  • Symptoms clearly flare with stress or specific foods
Possible root causes
  • SIBO (small intestinal bacterial overgrowth) — present in a large minority of IBS cases
  • Post-infectious IBS after food poisoning (anti-vinculin antibodies)
  • Dysbiosis, low stomach acid, poor bile flow
  • Visceral hypersensitivity driven by nervous-system dysregulation
  • FODMAP / histamine / gluten reactivity
Labs a practitioner may consider
  • SIBO breath test (lactulose or glucose)
  • Comprehensive stool analysis (GI-MAP)
  • IBS-Smart antibodies (anti-CdtB, anti-vinculin) for post-infectious IBS
  • Elimination diet (low-FODMAP, low-histamine) with practitioner guidance

Ayurveda — Vata Imbalance

In Ayurveda, Vata governs movement, breath, and the nervous system (air + ether elements). When elevated it manifests as dryness, coldness, restlessness, and irregularity.

Common symptoms
  • Anxiety, racing thoughts, difficulty settling
  • Dry skin/hair, cracking joints, cold hands and feet
  • Constipation, bloating, irregular appetite
  • Poor or interrupted sleep
Possible root causes
  • Chronic stress, over-scheduling, irregular routines
  • Cold, raw, or excessively light diet
  • Overuse of stimulants and travel
Labs a practitioner may consider
  • Nadi (pulse) & tongue assessment by a qualified Ayurvedic practitioner
  • HRV, cortisol rhythm (as Western correlates)

Ayurveda — Pitta Imbalance

Pitta governs metabolism, digestion, and transformation (fire element). When elevated it manifests as heat, inflammation, and sharp, intense responses.

Common symptoms
  • Heat intolerance, flushing, acid reflux
  • Skin inflammation (acne, rashes, rosacea)
  • Irritability, perfectionism, criticism under stress
  • Loose stools when stressed
Possible root causes
  • Spicy, oily, or fermented foods in excess
  • Overwork, driving ambition without recovery
  • Sun and heat overexposure
Labs a practitioner may consider
  • Ayurvedic dosha assessment
  • hs-CRP, ferritin, LFTs (as inflammation correlates)

Ayurveda — Kapha Imbalance

Kapha governs structure, lubrication, and stability (earth + water). When elevated it manifests as heaviness, congestion, and sluggishness.

Common symptoms
  • Weight gain, especially around the middle
  • Sinus/chest congestion, phlegm, heaviness
  • Slow morning start, low motivation
  • Emotional attachment, difficulty letting go
Possible root causes
  • Heavy, sweet, oily diet; overeating
  • Sedentary lifestyle, oversleeping
  • Damp/cold environments
Labs a practitioner may consider
  • Ayurvedic dosha assessment
  • Fasting insulin, HbA1c, TSH (as metabolic correlates)

Ayurveda — Weak Agni & Ama

Agni is the digestive fire. When weak, food is incompletely metabolized and ama (metabolic residue) accumulates — considered a root of most disease in Ayurveda.

Common symptoms
  • Coated tongue in the morning
  • Heaviness or brain fog after meals
  • Undigested food in stool, foul-smelling gas
  • Loss of taste for food, dull skin
Possible root causes
  • Eating when stressed, late-night eating, snacking constantly
  • Cold drinks with meals, poor food combining
  • Sedentary lifestyle, weak digestive rituals
Labs a practitioner may consider
  • Ayurvedic tongue and pulse assessment
  • Comprehensive stool analysis (as Western correlate)

Ayurveda — Depleted Ojas

Ojas is the refined essence of nourishment — the substrate of immunity, vitality, and resilience. Depletion follows chronic stress, illness, or over-exertion.

Common symptoms
  • Frequent illness, slow recovery
  • Deep fatigue, low vitality
  • Feeling 'burnt from within', emotional fragility
  • Loss of glow in skin and eyes
Possible root causes
  • Prolonged stress, grief, or overwork
  • Chronic infection, over-fasting or malnutrition
  • Excessive stimulation and inadequate rest
Labs a practitioner may consider
  • Ayurvedic ojas assessment (pulse, complexion, sattva)
  • Immunoglobulins, DHEA-S, ferritin, vitamin D (as Western correlates)

TCM — Qi Deficiency

In Traditional Chinese Medicine, Qi is vital energy. Spleen or Lung Qi deficiency presents as low energy, weak digestion, and vulnerability to illness.

Common symptoms
  • Deep fatigue not relieved by rest
  • Soft or tired voice, shortness of breath
  • Easy sweating, pale complexion
  • Loose stools, poor appetite
Possible root causes
  • Overwork, chronic worry, irregular meals
  • Cold and raw foods weakening Spleen Qi
  • Post-viral state, chronic illness
Labs a practitioner may consider
  • TCM pulse and tongue diagnosis
  • CBC, ferritin, thyroid panel (as Western correlates)

TCM — Yin Deficiency

Yin is the cooling, moistening, restorative substance. When deficient, heat and dryness rise — often seen in perimenopause, chronic stress, and burnout.

Common symptoms
  • Night sweats, warm palms and soles
  • Dry mouth, dry eyes, dry skin
  • Insomnia, especially waking after midnight
  • Afternoon flushing, hot flashes
Possible root causes
  • Chronic overwork without rest
  • Aging, perimenopause/andropause
  • Excessive stimulants, spicy foods, alcohol
Labs a practitioner may consider
  • TCM pulse and tongue diagnosis
  • Sex hormone panel, cortisol rhythm, thyroid (as Western correlates)

TCM — Yang Deficiency

Yang is the warming, activating force. Kidney Yang deficiency presents as coldness, low drive, and fluid retention — often paralleling hypothyroid and adrenal patterns.

Common symptoms
  • Cold lower back and knees
  • Low libido, low motivation
  • Frequent, clear urination
  • Pale complexion, edema
Possible root causes
  • Chronic exhaustion, cold exposure
  • Aging, long illness
  • Over-restriction of nourishing foods
Labs a practitioner may consider
  • TCM pulse and tongue diagnosis
  • TSH, free T3/T4, reverse T3, DHEA-S (as Western correlates)

TCM — Liver Qi Stagnation

The Liver in TCM ensures the free flow of Qi and emotion. When Liver Qi is constrained — often by stress or suppressed emotion — symptoms shift with mood and cluster on the sides of the body.

Common symptoms
  • Sighing, lump-in-throat sensation
  • Rib-side or chest tension
  • PMS with irritability and breast tenderness
  • Digestive symptoms that flare with stress
Possible root causes
  • Chronic stress, unexpressed anger or grief
  • Sedentary lifestyle
  • Alcohol and greasy food excess
Labs a practitioner may consider
  • TCM pulse and tongue diagnosis
  • LFTs, sex hormone panel (as Western correlates)

TCM — Blood Stasis

When Blood does not move freely, it stagnates — producing fixed, sharp pain and dark, clotted flow. Often follows long-standing Qi stagnation, cold, or trauma.

Common symptoms
  • Fixed, stabbing pain (headaches, menstrual cramps)
  • Dark, clotted menstrual flow
  • Purple-tinged tongue or lips
  • Visible spider veins, easy bruising
Possible root causes
  • Long-standing Qi stagnation
  • Cold exposure, trauma or surgery
  • Chronic inflammation
Labs a practitioner may consider
  • TCM pulse and tongue diagnosis
  • Coagulation panel, hs-CRP, iron studies (as Western correlates)

Methylation Dysfunction (MTHFR & B-Vitamin Cycle)

Methylation is a biochemical process that turns genes on and off, builds neurotransmitters, clears histamine, and detoxifies. Common variants (MTHFR C677T, A1298C, MTR, MTRR, COMT) can slow this pathway, producing wide-ranging effects on mood, energy, detox, and cardiovascular health.

Common symptoms
  • Persistent anxiety, depression, or mood swings that don't fully respond to standard care
  • Histamine intolerance and estrogen-related symptoms
  • Worsening on folic-acid-fortified foods or standard multivitamins
  • Family history of miscarriage, early heart disease, or clotting issues
Possible root causes
  • MTHFR / MTR / MTRR / COMT genetic variants
  • Low B12, folate, B6, riboflavin, choline, magnesium, or zinc
  • High oxidative stress or heavy toxic burden depleting methyl donors
Labs a practitioner may consider
  • MTHFR / methylation SNP panel
  • Homocysteine, MMA, active B12, RBC folate
  • Organic acids test (methylation & neurotransmitter markers)

Autism Spectrum / ADHD & Neurodivergent Patterns

Neurodevelopmental patterns with a strong genetic and neurobiological basis, often amplified by gut, immune, methylation, mitochondrial, and environmental factors. Functional medicine does not 'cure' neurodivergence — it works to reduce the physiological load that worsens focus, sensory overwhelm, sleep, and regulation.

Common symptoms
  • Lifelong difficulty with attention, executive function, or task follow-through
  • Sensory sensitivities (sound, light, textures, food)
  • Social overwhelm, strong routines and interests, emotional regulation challenges
  • Sleep, gut, and immune issues that commonly co-travel
Possible root causes
  • Genetic and neurodevelopmental factors
  • Gut dysbiosis, food sensitivities, and gut–brain axis inflammation
  • Methylation, mitochondrial, and mineral (zinc, magnesium, iron) imbalances
  • Toxic burden and chronic infections that amplify neuroinflammation
Labs a practitioner may consider
  • Comprehensive stool analysis, organic acids test
  • Methylation SNPs, homocysteine, active B12, RBC folate
  • Ferritin, zinc, copper, magnesium RBC

Chronic Brain Fog

A subjective but very real cognitive haze — slow processing, poor recall, word-finding trouble, and difficulty holding a thought. Rarely a diagnosis on its own; almost always a signal of an upstream driver such as neuroinflammation, gut dysbiosis, mold, blood-sugar swings, poor sleep, or mitochondrial strain.

Common symptoms
  • Feeling like you're thinking through cotton wool
  • Word-finding difficulty and short-term memory lapses
  • Worse after meals, poor sleep, or specific foods (gluten, dairy, sugar)
  • Worse in water-damaged buildings or with hormonal shifts
Possible root causes
  • Neuroinflammation, gut dysbiosis, mold/CIRS
  • Blood-sugar dysregulation, poor sleep, HPA-axis strain
  • Mitochondrial dysfunction, nutrient deficiencies (B12, iron, omega-3)
Labs a practitioner may consider
  • hs-CRP, homocysteine, HbA1c, fasting insulin
  • GI-MAP or stool analysis; mycotoxin panel where indicated
  • Ferritin, active B12, vitamin D, omega-3 index

Chronic Fatigue Syndrome (ME/CFS)

A serious, multi-system illness defined by profound fatigue lasting 6+ months that isn't relieved by rest, post-exertional malaise (crashes after physical OR mental effort), unrefreshing sleep, and cognitive impairment. Functional medicine looks at mitochondrial function, chronic infections, autonomic dysregulation, and HPA-axis burnout as commonly overlapping drivers.

Common symptoms
  • Profound fatigue substantially reducing what you can do, for 6+ months
  • Post-exertional malaise — crashes 12–72 hours after even mild exertion
  • Unrefreshing sleep no matter how many hours
  • Cognitive impairment ('brain fog') and orthostatic intolerance
Possible root causes
  • Post-viral triggers (EBV, COVID, enteroviruses)
  • Mitochondrial dysfunction and impaired energy production
  • Autonomic nervous system dysregulation (POTS overlap)
  • HPA-axis burnout with low cortisol output
Labs a practitioner may consider
  • Viral panels (EBV, HHV-6, CMV), tick-borne panel
  • Organic acids (mitochondrial markers), amino acids
  • 4-point salivary cortisol, tilt-table / NASA lean test

Food Sensitivities

Delayed, dose-dependent immune and digestive reactions to specific foods — most often gluten, dairy, eggs, soy, corn, nuts, nightshades, or high-histamine foods. Unlike true IgE allergies, symptoms show up hours to a day later as bloating, brain fog, skin flares, joint aches, headaches, or fatigue, which is why the trigger is usually missed. Sensitivities almost always sit on top of a leaky gut, dysbiosis, or low digestive capacity — treating the terrain is what shrinks the reactive list over time.

Common symptoms
  • Bloating, gas, or loose stools 2–24 hours after certain meals
  • Brain fog, headaches, or fatigue after eating
  • Skin flares — eczema, acne, rosacea, itching, hives
  • Joint aches, stiffness, or muscle soreness that tracks with diet
  • Chronic congestion, post-nasal drip, or dark under-eye circles
Possible root causes
  • Intestinal permeability ('leaky gut') from stress, alcohol, NSAIDs, or infection
  • Gut dysbiosis, SIBO, H. pylori, candida, or parasites
  • Low stomach acid or poor bile flow (undigested proteins reaching the small intestine)
  • Histamine overload or MCAS masquerading as food reactions
  • Undiagnosed celiac disease or non-celiac gluten sensitivity
Labs a practitioner may consider
  • Celiac panel (tTG-IgA, total IgA) before removing gluten
  • Structured 3–4 week elimination and reintroduction (the diagnostic gold standard)
  • Comprehensive stool test (dysbiosis, digestive markers, calprotectin)
  • SIBO breath test, H. pylori testing
  • Zonulin, diamine oxidase (DAO), or histamine markers where relevant

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Content on this page is for educational purposes only and does not constitute medical advice, diagnosis, or treatment. Always consult a licensed medical professional before making changes to your care.